GgaALTA1029365-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009545 | SLC25A12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:HGNC Symbol;Acc:HGNC:10982]
Coordinates
chr7:17433365-17434230:+
Coord C1 exon
chr7:17433365-17433511
Coord A exon
chr7:17434204-17434207
Coord C2 exon
chr7:17434208-17434230
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
GTATCATTTAATTTTTACAGGTA
3' ss Score
8.9
Exon sequences
Seq C1 exon
GAGCTGCAGTCAGAACATGCAAGACAAGCCTTTTCATTGAAGGACAAAAATAAAAGTGGCATGATTACTGGGCTGGACTTCCGTGATGTCATGGTTACCCTTCACTCCCATATGCTGACACCATTTGTGGAAGAAAATTTAGTTTCG
Seq A exon
GTAG
Seq C2 exon
CTGGTGGAACTGTTTCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545-19-15,19-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(29.1=61.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACTGGGCTGGACTTCCGT
R:
TGATGTGAAACAGTTCCACCAG
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]