DreALTA0027106-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000102362 | slc25a12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:ZFIN;Acc:ZDB-GENE-031006-11]
Coordinates
chr6:3812921-3813292:-
Coord C1 exon
chr6:3813146-3813292
Coord A exon
chr6:3813056-3813059
Coord C2 exon
chr6:3812921-3813055
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
GTGTCTGTGTGTCCTCTTAGGCA
3' ss Score
10.14
Exon sequences
Seq C1 exon
GAGCTGCAGCTGGAACATGCTCGACAGGCGTTTGTGCAGAAAGACAAGGTCAAGAGCGGCATGATCTCATCCCTGGACTTCAGTGACATCATGTCCACCATTAGACACCACATGCTCACACCTTTTGTGGAGGAAAACCTCGTATCT
Seq A exon
GCAG
Seq C2 exon
CAGGGGGCGGCACCTCTCACATGGTGAGCTTCTCCTACTTCAATGCCTTCAACTCTCTGCTTAACAACATGGAAATGATCCGTAAAATCTACAGCACTCTCGCTGGAAGTCGGAAGGACACGCTTGTCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102362-9-9,9-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCACATGCTCACACCTT
R:
AGCAGAGAGTTGAAGGCATTGA
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]