DreEX0072232 @ danRer10
Exon Skipping
Gene
ENSDARG00000102362 | slc25a12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:ZFIN;Acc:ZDB-GENE-031006-11]
Coordinates
chr6:3812921-3815592:-
Coord C1 exon
chr6:3815453-3815592
Coord A exon
chr6:3813146-3813292
Coord C2 exon
chr6:3812921-3813059
Length
147 bp
Sequences
Splice sites
3' ss Seq
GCACACTTGTGCTTTCATAGGAG
3' ss Score
6.2
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AGAACGTGCGAGACATCTTCAGCCAGACGACCGTGCACCACCACATCCCCTTCAACTGGGACTGCGAGTTCATCCGCTTGCATTTCGGAAATGCCAGAAACAAGCGGCTCAGTTATCTGGAGTTCGGACAGTTCCTGCAG
Seq A exon
GAGCTGCAGCTGGAACATGCTCGACAGGCGTTTGTGCAGAAAGACAAGGTCAAGAGCGGCATGATCTCATCCCTGGACTTCAGTGACATCATGTCCACCATTAGACACCACATGCTCACACCTTTTGTGGAGGAAAACCTCGTATCT
Seq C2 exon
GCAGCAGGGGGCGGCACCTCTCACATGGTGAGCTTCTCCTACTTCAATGCCTTCAACTCTCTGCTTAACAACATGGAAATGATCCGTAAAATCTACAGCACTCTCGCTGGAAGTCGGAAGGACACGCTTGTCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102362-'8-8,'8-7,9-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=PD(47.4=38.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGACATCTTCAGCCAGAC
R:
CTTCCGACTTCCAGCGAGAGT
Band lengths:
253-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]