GgaEX1053021 @ galGal3
Exon Skipping
Gene
ENSGALG00000009545 | F1P3D8_CHICK
Description
NA
Coordinates
chr7:19357548-19359438:+
Coord C1 exon
chr7:19357548-19357687
Coord A exon
chr7:19358461-19358607
Coord C2 exon
chr7:19359300-19359438
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTCTGAATATTAATCTTAGGAG
3' ss Score
4.28
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
CAAATGTCAAAGAAGTATTTGAACAAACTACTACTCATCATCAAATCCCCTTCAATTGGGACTGTGAATTCATTCGTCTGCATTTTGGACATAACAGAAAGAAACACCTTAACTATACAGAGTTCACTCAGTTTCTTCAG
Seq A exon
GAGCTGCAGTCAGAACATGCAAGACAAGCCTTTTCATTGAAGGACAAAAATAAAAGTGGCATGATTACTGGGCTGGACTTCCGTGATGTCATGGTTACCCTTCACTCCCATATGCTGACACCATTTGTGGAAGAAAATTTAGTTTCG
Seq C2 exon
GTAGCTGGTGGAACTGTTTCACATCAGGTCAGCTTCTCCTACTTCAATGCATTTAATGCCCTTTTGAATAACATGGATCTTGTTAGGAAGATATATAGTAATATAGCAGGTACAAGAAAAGATGTTGAAGTCACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(44.7=100)
A:
PF134991=EF-hand_7=PD(29.1=61.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACTCATCATCAAATCCCCTTCA
R:
ACTTCAACATCTTTTCTTGTACCTGC
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]