GgaEX1053021 @ galGal4
Exon Skipping
Gene
ENSGALG00000009545 | SLC25A12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:HGNC Symbol;Acc:HGNC:10982]
Coordinates
chr7:17419032-17453937:+
Coord C1 exon
chr7:17419032-17419174
Coord A exon
chr7:17433365-17433511
Coord C2 exon
chr7:17453799-17453937
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTCTGAATATTAATCTTAGGAG
3' ss Score
4.28
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
TATGCCAGTGTTGAGAAAGATGGAGAGCATTACATGACCCCAGAAGATTTTGTGCAGAAATACCTAGGACTTTATACAGATCCACGTTACAATCCTAAAACAGTACAGCTGTTGGCTGGAGTGGCAGATCAAACTAAAGATGG
Seq A exon
GAGCTGCAGTCAGAACATGCAAGACAAGCCTTTTCATTGAAGGACAAAAATAAAAGTGGCATGATTACTGGGCTGGACTTCCGTGATGTCATGGTTACCCTTCACTCCCATATGCTGACACCATTTGTGGAAGAAAATTTAGTTTCG
Seq C2 exon
GGTGCCAAAGCATGTTTCCTCAGAGACATTCCCTTTTCTGCAATCTACTTTCCTGTTTATGCTCATAGCAAACTGATGCTCGCTGATGAAAATGGCCATGTGGGAGGGCTTAATCTCCTTGCAGCTGGAGCCATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545_MULTIEX1-4/12=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(78.4=83.3)
A:
PF134991=EF-hand_7=PD(29.1=61.2)
C2:
PF0015322=Mito_carr=PD(33.0=63.8),PF0015322=Mito_carr=PU(15.5=31.9)
Main Skipping Isoform:
ENSGALT00000015535fB1632
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGCATTACATGACCCCA
R:
GCTGCAAGGAGATTAAGCCCT
Band lengths:
248-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]