RnoEX6017378 @ rn6
Exon Skipping
Gene
ENSRNOG00000022922 | Slc25a12
Description
solute carrier family 25 member 12 [Source:RGD Symbol;Acc:1305181]
Coordinates
chr3:57918412-57937093:-
Coord C1 exon
chr3:57936954-57937093
Coord A exon
chr3:57920893-57921039
Coord C2 exon
chr3:57918412-57918550
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCTTCTCCCTGCAGGAA
3' ss Score
14.37
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAAATGTCAAGGAGATTTTCGGACAGACTATTATCCATCACCACATCCCCTTTAACTGGGACTGCGAGTTCATCCGGCTGCACTTTGGGCACAACCGCAAGAAGCACCTGAACTATGTGGAATTCACTCAGTTCCTCCAG
Seq A exon
GAATTGCAATTGGAGCACGCAAGGCAAGCCTTTGCGCTGAAAGACAAGAGCAAAAGCGGCATGATCTCAGGCCTGGATTTCAGTGATGTCATGGTCACCATCCGGTCCCACATGCTCACTCCTTTTGTGGAGGAGAACCTAGTCTCA
Seq C2 exon
GCTGCTGGAGGGAGTACCTCACACCAAGTTAGCTTCTCCTACTTCAACGCGTTTAACTCCCTGCTCAACAATATGGAGCTGGTTCGCAAGATCTACAGCACTCTGGCCGGCACAAGGAAAGACATTGAAGTTACCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022922-'4-14,'4-13,6-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(31.0=19.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAGGAGATTTTCGGACAGAC
R:
CGGCCAGAGTGCTGTAGATCT
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]