BtaEX6009063 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016762 | SLC25A12
Description
Bos taurus solute carrier family 25 (mitochondrial carrier, Aralar), member 12 (SLC25A12), mRNA. [Source:RefSeq mRNA;Acc:NM_001101194]
Coordinates
chr2:24723282-24736543:+
Coord C1 exon
chr2:24723282-24723421
Coord A exon
chr2:24734117-24734263
Coord C2 exon
chr2:24736405-24736543
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTCTGACTTCTCCCTCCAGGAA
3' ss Score
12.28
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAAATGTCAAAGAAATTTTTGGACAGACTACTATTCACCATCATATCCCTTTTAATTGGGACTGTGAATTTATCCGGCTACATTTTGGGCATAATCGGAAGAAGCACCTTAACTACACAGAATTCACACAGTTTCTTCAG
Seq A exon
GAACTACAGTTGGAACATGCAAGGCAAGCCTTTGCTCTCAAAGACAAAAGCAAAAGTGGCCTGATTTCTGGTCTGGATTTCAGTGACATTATGGTTACCATCCGGTCTCACATGCTCACTCCCTTCGTGGAGGAGAACTTAGTTTCA
Seq C2 exon
GCAGCCGGAGGAAGTATCTCACACCAGGTTAGCTTCTCATACTTCAATGCATTTAACTCCTTACTGAATAACATGGAGCTTGTTCGTAAGATATATAGCACTCTAGCTGGCACAAGGAAAGATGTTGAAGTCACAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016762-'10-16,'10-12,11-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(31.0=19.1),PF134991=EF-hand_7=PU(42.9=51.1)
A:
PF134991=EF-hand_7=PD(30.6=61.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAGACTACTATTCACCATCA
R:
ACATCTTTCCTTGTGCCAGCT
Band lengths:
246-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]