MmuEX6102096 @ mm10
Exon Skipping
Gene
ENSMUSG00000027010 | Slc25a12
Description
solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:MGI Symbol;Acc:MGI:1926080]
Coordinates
chr2:71312425-71324115:-
Coord C1 exon
chr2:71323976-71324115
Coord A exon
chr2:71314983-71315129
Coord C2 exon
chr2:71312425-71312563
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTTCTCCCTGCAGGAA
3' ss Score
14.78
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAAATGTCAAGGAGATTTTTGGGCAGACTATTATCCATCACCACATCCCTTTTAACTGGGACTGCGAGTTCATCCGGCTGCACTTTGGGCACAACCGCAAGAAGCACCTGAACTATGTGGAATTCACTCAGTTCCTCCAG
Seq A exon
GAATTGCAATTGGAACACGCAAGGCAAGCCTTTGCACTGAAAGACAAGAGCAAAAGCGGCATGATCTCGGGTCTGGATTTCAGTGACGTCATGGTCACCATCCGGTCCCACATGCTCACTCCTTTTGTGGAGGAGAACCTGGTCTCA
Seq C2 exon
GCTGCCGGAGGGGGTACCTCACACCAAGTTAGCTTCTCCTACTTCAACGCATTTAACTCCTTACTCAACAACATGGAGCTTGTTCGAAAGATCTATAGCACTTTAGCAGGCACGAGGAAAGATATTGAAGTCACCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027010-'25-16,'25-15,28-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(31.0=19.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAGGAGATTTTTGGGCAGA
R:
TTCCTCGTGCCTGCTAAAGTG
Band lengths:
255-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types