BtaALTA0029518-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37288467-37290226:-
Coord C1 exon
chr2:37289995-37290226
Coord A exon
chr2:37288629-37288633
Coord C2 exon
chr2:37288467-37288628
Length
5 bp
Sequences
Splice sites
5' ss Seq
ACGGTACCT
5' ss Score
6.79
3' ss Seq
AAAATCATTTTATCTTTTAGAGC
3' ss Score
8.53
Exon sequences
Seq C1 exon
GTCGTGGCCTACCACTACTGCCAGGCCGACAACACCTACACGTGCCTGGTGCCCGAGTTCGTGCACAGCATCGCGGCCCTGCTCTGCCGCTCCCACCAGCTGGCCGCCTACCGGGACCTGCTGATAAGGGAGCCCCAGCTCCAGAGCATGCTGAGCCTCAGGTCCTGTGTGCAGGACCCGGTGGCCGCCTTCAAGCGGGGCGTGCTGGAGCCACTCACAAGCCTGAGAAACG
Seq A exon
AGCAG
Seq C2 exon
AAAATTCCTGAAGAAGAATACATTATTTTGATAGATGGCTTAAATGAAGCTGAGTTTCATAAACCTGATTATGGAGATACGCTTTCTTCCTTTATTACCAAGATTATTTCTAAATTCCCTGCTTGGTTGAAGTTGATTGTGACTGTAAGAGCCAATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-27-30,27-29-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTCACAAGCCTGAGAAA
R:
AGCGTATCTCCATAATCAGGTTT
Band lengths:
106-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development