RnoALTA0039729-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45868297-45870299:+
Coord C1 exon
chr3:45868297-45868528
Coord A exon
chr3:45870133-45870137
Coord C2 exon
chr3:45870138-45870299
Length
5 bp
Sequences
Splice sites
5' ss Seq
ACGGTACCA
5' ss Score
5.45
3' ss Seq
AAAATCATTTCATCTTTCAGAGC
3' ss Score
8.48
Exon sequences
Seq C1 exon
GTGGTGGCCTACCATTACTGCCAGGCAGACAACACGTACACGTGTCTGGTACCTGAGTTTGTGCACAGCATTGCAGCTTTGCTGTGCCGGTCCCACCAGCTGGCTGCCTACCGAGACCTTCTGATCAGGGAGCCCCAGCTACAGAGCATGCTGAACCTCCGCTCCTGTGTGCAGGATCCTGTGGCTGCTTTCAAGAGGGGCATCCTGGAGCCACTTACAAACCTAAGAAACG
Seq A exon
AGCAG
Seq C2 exon
AAAATTCCAGAAGAGGAATACATCATCTTGATAGATGGCTTGAATGAAGCCGAATTTCATAAGCCTGATTACGGGGACACGCTGTCTTCATTCATTACCAAAATCATTCCTAAGTTCCCCCCCTGGCTGAAGTTGATCGTGACCGTGAGAGCAGATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-47-23,47-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGCCACTTACAAACCT
R:
TGTCCCCGTAATCAGGCTTATG
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]