GgaALTA1031653-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000012570 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr7:36008602-36010303:+
Coord C1 exon
chr7:36008602-36008833
Coord A exon
chr7:36010190-36010194
Coord C2 exon
chr7:36010195-36010303
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ATGTAAATTTTGTATTTCAGAGC
3' ss Score
8.61
Exon sequences
Seq C1 exon
GTTGTTGCTTATCACTATTGTCAAGCTGACAACACATACACTTGTCTTGTCCCAGAATTTGTGCACAGCATTGCAGCTTTGCTTTGTCGTTCGAGTCAATTAACAGCATACAAAGATCTTCTAATAAAAGAGCCTCATTTACAAAGCATGCTTAGCCTGAGATCTTGTGTCCAAGATCCAGCAGCAGCTTTTAAAAGGGGAGTGTTGGAACCACTTTCAAACCTCAGGAAAG
Seq A exon
AGCAG
Seq C2 exon
AAAATTCCCGAGGAAGAATACATAATTTTGATCGATGGTCTAAATGATGCTGAATTCCATAAACCTGATTATGGTGACACAATTTCGTCATTTCTTGCAAAGATAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-14-19,14-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGGGAGTGTTGGAACCAC
R:
TCAGCATCATTTAGACCATCGA
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]