RnoEX0088527 @ rn6
Exon Skipping
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45865920-45870299:+
Coord C1 exon
chr3:45865920-45866071
Coord A exon
chr3:45868297-45868528
Coord C2 exon
chr3:45870133-45870299
Length
232 bp
Sequences
Splice sites
3' ss Seq
ATGTCTCGGTTTCTCCCTAGGTG
3' ss Score
11.76
5' ss Seq
ACGGTACCA
5' ss Score
5.45
Exon sequences
Seq C1 exon
CCTCAGATCCCACCCATGACCTTCCCGGTACTCCGTTACTTTCACCAAGTTCTTCCACAAGCGCTCTCGGTGCGGCCAGAACACCTCCCGGGCCCGGTACTGTTGACAGCCAGAGACCAAGAGAGGATGCGGTGAAATACCTCGCCTCTAAG
Seq A exon
GTGGTGGCCTACCATTACTGCCAGGCAGACAACACGTACACGTGTCTGGTACCTGAGTTTGTGCACAGCATTGCAGCTTTGCTGTGCCGGTCCCACCAGCTGGCTGCCTACCGAGACCTTCTGATCAGGGAGCCCCAGCTACAGAGCATGCTGAACCTCCGCTCCTGTGTGCAGGATCCTGTGGCTGCTTTCAAGAGGGGCATCCTGGAGCCACTTACAAACCTAAGAAACG
Seq C2 exon
AGCAGAAAATTCCAGAAGAGGAATACATCATCTTGATAGATGGCTTGAATGAAGCCGAATTTCATAAGCCTGATTACGGGGACACGCTGTCTTCATTCATTACCAAAATCATTCCTAAGTTCCCCCCCTGGCTGAAGTTGATCGTGACCGTGAGAGCAGATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-'46-22,'46-21,47-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.745 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(1.4=2.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGATCCCACCCATGACCT
R:
ACGGTCACGATCAACTTCAGC
Band lengths:
302-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]