BtaEX6009654 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37288467-37293117:-
Coord C1 exon
chr2:37292963-37293117
Coord A exon
chr2:37289995-37290226
Coord C2 exon
chr2:37288467-37288633
Length
232 bp
Sequences
Splice sites
3' ss Seq
ACGGCTCTGCTTCCCCGCAGGTC
3' ss Score
12.29
5' ss Seq
ACGGTACCT
5' ss Score
6.79
Exon sequences
Seq C1 exon
CTTCAGATTCCTCCCAGGATGTTCCTTTCACTCCACTGCTTTCACCAACTTCTTCTACAAGTGGTTCTGGTGCGGCTAAATCCCCCCCAGTGTCTGGATCTGATCCTGAGAACCAGAGACCACGAGAGGATTCCGTGAAATACCTGGCTTCTAAG
Seq A exon
GTCGTGGCCTACCACTACTGCCAGGCCGACAACACCTACACGTGCCTGGTGCCCGAGTTCGTGCACAGCATCGCGGCCCTGCTCTGCCGCTCCCACCAGCTGGCCGCCTACCGGGACCTGCTGATAAGGGAGCCCCAGCTCCAGAGCATGCTGAGCCTCAGGTCCTGTGTGCAGGACCCGGTGGCCGCCTTCAAGCGGGGCGTGCTGGAGCCACTCACAAGCCTGAGAAACG
Seq C2 exon
AGCAGAAAATTCCTGAAGAAGAATACATTATTTTGATAGATGGCTTAAATGAAGCTGAGTTTCATAAACCTGATTATGGAGATACGCTTTCTTCCTTTATTACCAAGATTATTTCTAAATTCCCTGCTTGGTTGAAGTTGATTGTGACTGTAAGAGCCAATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-'26-29,'26-28,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(18.1=28.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTCCACTGCTTTCACCAAC
R:
TGGAAATTGGCTCTTACAGTCACA
Band lengths:
294-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]