DreEX0077210 @ danRer10
Exon Skipping
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11847163-11854352:-
Coord C1 exon
chr6:11854228-11854352
Coord A exon
chr6:11849955-11850186
Coord C2 exon
chr6:11847163-11847329
Length
232 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCCTCTCTGTTGTAGGTG
3' ss Score
12.68
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATCGAGGGTCAGATGCTGCTCAAAGCAGTCAGCTGAACCCTGCATCACAGAGTCCCATTCGCTGCCCCTCGACCCCAGAGACACACCGGCACAGAGAGGGCGCCGTCAAACGCCTGGCTGGCAAG
Seq A exon
GTGGTGGCGTATCACTACTGTCAGGCTGATAACACATACACATGCCTGGTCCCTGAGTTTGTGCACAGTGTGTCTGCATTACTGTGCAGAGCTCCTCTTCTCAATGCATATCGAGAGCTGTTACTCAGAGAAACACACTTGCAGAGTCTGCTCAGCTTACGCTCCTGCGTCCAGGACCCTGCAGCCGCTTTCCGAAAGGGAGTTCTGGAGCCTCTCACACTTCTGCGCAAAG
Seq C2 exon
AGCGGAAGATTCCTGAGGAGGATTACATCATCCTTGTGGATGGACTAAATGAGGCAGAGTTCCACAAACCAGATTATGGAGACACCATCGCCTCCTTCGTCACCAAAATCATCTCCAAATTTCCTGTTTGGCTCAAGCTGATTGTGACTGTCCGGGCCAACCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073-'15-16,'15-14,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.817 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(28.1=64.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAGGGTCAGATGCTGCTC
R:
TTGGCCCGGACAGTCACAATC
Band lengths:
285-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]