HsaEX6016144 @ hg38
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:159172121-159176518:+
Coord C1 exon
chr2:159172121-159172272
Coord A exon
chr2:159174953-159175184
Coord C2 exon
chr2:159176352-159176518
Length
232 bp
Sequences
Splice sites
3' ss Seq
ACGGTTCTGCTTCCCCCTAGGTG
3' ss Score
12.48
5' ss Seq
ATGGTACTT
5' ss Score
5.19
Exon sequences
Seq C1 exon
CCTCTGACCCCACTCAGGATCTTCATTTCACTCCGTTGCTTTCACCGAGTTCTTCCACAAGTGCTTCCAGCACAGCTAAAACACCTCTTGGGTCTATCAGTGCTGAAAACCAGAGACCAAGAGAGGATGCAGTGAAATATCTTGCTTCTAAG
Seq A exon
GTGGTGGCCTACCACTACTGCCAGGCTGACAACACGTACACTTGCCTGGTGCCCGAGTTTGTGCACAGCATCGCAGCTTTGCTCTGCCGGTCCCATCAGCTGGCCGCCTACAGAGACCTTCTGATAAAGGAGCCCCAACTACAGAGCATGCTGAGCCTCCGATCCTGTGTGCAGGACCCGGTGGCAGCTTTCAAGAGGGGAGTGCTGGAGCCACTCACAAACCTGAGAAATG
Seq C2 exon
AGCAGAAAATTCCTGAAGAAGAATACATTATTTTGATAGATGGCTTAAATGAAGCTGAGTTTCATAAACCTGATTATGGAGATACGCTTTCTTCATTTATTACCAAAATTATTTCTAAATTTCCTGCCTGGTTGAAGTTGATTGTGACTGTAAGAGCAAATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-'60-45,'60-44,61-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGACCCCACTCAGGATC
R:
TCAACTTCAACCAGGCAGGAA
Band lengths:
293-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains