GgaEX0018990 @ galGal3
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38144054-38146692:+
Coord C1 exon
chr7:38144054-38144205
Coord A exon
chr7:38144938-38145169
Coord C2 exon
chr7:38146526-38146692
Length
232 bp
Sequences
Splice sites
3' ss Seq
TTTTTACTTCTTTTCTCCAGGTT
3' ss Score
10.93
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCAGCGATTCCTGTCAGGAGATTCCCTTAAGTCAGTTACCTCTGTCTACTGCTCCTCCAAGTGGTACCTATACAGTGAAGACCATGAATTGTCCTGGTACTCCTGACAACCAGAATCAAACAGGTGACTCTGTGAAACGCCTTGCCTCAAGG
Seq A exon
GTTGTTGCTTATCACTATTGTCAAGCTGACAACACATACACTTGTCTTGTCCCAGAATTTGTGCACAGCATTGCAGCTTTGCTTTGTCGTTCGAGTCAATTAACAGCATACAAAGATCTTCTAATAAAAGAGCCTCATTTACAAAGCATGCTTAGCCTGAGATCTTGTGTCCAAGATCCAGCAGCAGCTTTTAAAAGGGGAGTGTTGGAACCACTTTCAAACCTCAGGAAAG
Seq C2 exon
AGCAGAAAATTCCCGAGGAAGAATACATAATTTTGATCGATGGTCTAAATGATGCTGAATTCCATAAACCTGATTATGGTGACACAATTTCGTCATTTCTTGCAAAGATAATTTGTAAGTTTCCTCCCTGGCTGAAGCTCATTGTGACTGTGAGAACTAATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(16.0=25.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCGATTCCTGTCAGGA
R:
CAATGAGCTTCAGCCAGGGAG
Band lengths:
296-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]