BtaALTA0032088-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000020296 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:26526030-26529282:-
Coord C1 exon
chr2:26529143-26529282
Coord A exon
NA
Coord C2 exon
chr2:26526030-26526185
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTTTTTTTTTTTTTAGCAGCTG
3' ss Score
7.97
Exon sequences
Seq C1 exon
GTTTTGCAAAAGGCATCAAATTAAATCAAGTTCAAATATTCCTTGTGTCCCCAAAGACTTACTGATGATGTCTGAATTTGTTCTTCCAAGATTTATTTTTTGTCTTATTCAGTATTTAAGAGAAGGCTATAATGAACCAG
Seq A exon
NA
Seq C2 exon
CTGATGTTCCATCAGAGAAAGACCTTAATAAAGTCCTTCAGCTTTTGGAACCTCAAATTTCCTTTTTAGAAGATCTAACTAAAATGGGAGGAGCAATGCGATCTGTTCTTACTCAGGTTTTAACAAACCAACAAAACTACAAAGATCTGACTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020296-1-3,1-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0220715=zf-UBR=PD(8.5=12.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAAGAGAAGGCTATAATGAACCAG
R:
AAAAGGAAATTTGAGGTTCCAAAAGC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development