RnoALTA0043258-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000008616 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:RGD Symbol;Acc:1565257]
Coordinates
chr3:56148805-56152705:+
Coord C1 exon
chr3:56148805-56148944
Coord A exon
NA
Coord C2 exon
chr3:56152550-56152705
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTATTTTCTTTCTTTAGCAGCTG
3' ss Score
8.17
Exon sequences
Seq C1 exon
GTTTTGCAGAAGACATCAGATTAAATCAAGTTCTAATATTCCCTGTGTCCCCAAAGACTTACTGATGATGTCTGAATTTGTTCTTCCAAGATTCATTTTTTGTCTTATTCAGTACTTAAGAGAAGGCTATAATGAACCAG
Seq A exon
NA
Seq C2 exon
CTGATACACCATCAGAAAAAGATCTGAACAAAGTCCTTCAGCTTTTGGAGCCTCAGATTTCCTTTTTAGAAGACCTGACTAAAACGGGAGGAGCAATGAGGGCTGTTCTCACTCAGGTGCTGACAAACCAGCAGAGCTACAAAGACCTGACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008616-5-3,5-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0220715=zf-UBR=PD(8.5=12.5)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTAAGAGAAGGCTATAATGAACCA
R:
AAAGGAAATCTGAGGCTCCAA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]