HsaALTA1032757-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:169872236-169875949:+
Coord C1 exon
chr2:169872236-169872375
Coord A exon
NA
Coord C2 exon
chr2:169875794-169875949
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTCTTTTTTTCTTTTAGCAGCTG
3' ss Score
7.59
Exon sequences
Seq C1 exon
GTTTTGCAAAAGGCATCAAATTAAATCAAGTTCAAATATTCCCTGTGTCCCTAAAGACTTACTGATGATGTCTGAATTTGTTCTTCCAAGATTTATATTTTGTCTTATTCAGTACTTAAGAGAAGGCTATAATGAACCAG
Seq A exon
NA
Seq C2 exon
CTGATGGACCATCAGAAAAGGACCTTAACAAAGTCCTTCAGCTTTTGGAACCTCAAATTTCCTTTTTAGAAGACCTGACTAAAATGGGAGGAGCAATGCGGTCTGTTCTTACTCAGGTTTTGACAAACCAACAAAACTACAAAGATCTGACTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357-7-3,7-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0220715=zf-UBR=PD(8.5=12.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGATGTCTGAATTTGTTCTTCCA
R:
AGGTCCTTTTCTGATGGTCCA
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains