GgaALTA1034186-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009608 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr7:18056996-18057689:-
Coord C1 exon
chr7:18057550-18057689
Coord A exon
chr7:18057111-18057154
Coord C2 exon
chr7:18056996-18057110
Length
44 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TCTTGTTATGTGGCTTTCAGCTC
3' ss Score
7.87
Exon sequences
Seq C1 exon
GTTTTGTAAAAGACACCGGATTAAGTCAAATTCAAATGTTCCATGTGTTCCAAAAGACTTGTTGATGATGTCAGAATTGGTCCTTCCACAGTTTATCTTTAGTCTTATTCAGCACTTACGAGAAGGATATAATGAGCCAG
Seq A exon
CTCTTGATCTGCCATCAGAGAAAGACCTTCATAAAATCCTCCAG
Seq C2 exon
GTTTTGGAGCCTCACGTTTCCTTTCTAGAAGACTTGACCAAAATGGGAGGAGCAATGCGATCAGTTCTTACCCAGGTTTTGACTAGCCAACAGTTCTACAAAGATCTCAGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608-3-4,3-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTCAGAATTGGTCCTTCCA
R:
GATCGCATTGCTCCTCCCATT
Band lengths:
137-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]