BtaALTA0032088-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000020296 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:26526030-26529282:-
Coord C1 exon
chr2:26529143-26529282
Coord A exon
chr2:26526186-26526188
Coord C2 exon
chr2:26526030-26526185
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTTTTTTTTTTTTTTTTAGCAG
3' ss Score
9.77
Exon sequences
Seq C1 exon
GTTTTGCAAAAGGCATCAAATTAAATCAAGTTCAAATATTCCTTGTGTCCCCAAAGACTTACTGATGATGTCTGAATTTGTTCTTCCAAGATTTATTTTTTGTCTTATTCAGTATTTAAGAGAAGGCTATAATGAACCAG
Seq A exon
CAG
Seq C2 exon
CTGATGTTCCATCAGAGAAAGACCTTAATAAAGTCCTTCAGCTTTTGGAACCTCAAATTTCCTTTTTAGAAGATCTAACTAAAATGGGAGGAGCAATGCGATCTGTTCTTACTCAGGTTTTAACAAACCAACAAAACTACAAAGATCTGACTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020296-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0220715=zf-UBR=PD(8.5=12.5)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAAGAGAAGGCTATAATGAACCAG
R:
AAAAGGAAATTTGAGGTTCCAAAAGC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development