BtaALTA0034147-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012738 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr17:12720535-12724554:+
Coord C1 exon
chr17:12720535-12720672
Coord A exon
chr17:12724383-12724384
Coord C2 exon
chr17:12724385-12724554
Length
2 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCCTGTCCCTTCTCCCCCAGAGG
3' ss Score
10.5
Exon sequences
Seq C1 exon
AAACAGAAAAGATAGTCCTCGAGGCAGGAAACGGGTTGCCCTCCTGGAAATTCAACGACCAGCTCTTCCCCTGTGACGTGTGTGGGAAAGTATTTGGGCGGCAGCAGACGCTGTCCCGACACCTGTCTCTGCACACAG
Seq A exon
AG
Seq C2 exon
GAAAGAAAATACAAATGCCACTTGTGCCCCTATGCTGCTAAGTGCCGCGCAAACCTGAACCAGCACCTGACTGTCCACTCGGTGAAGCTGGTGAGCACGGACACCGAGGACATCGTCAGCGCCGTCACCTCCGAAGGCAGTGATGGGAAGAAGCACCCTTATTATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012738-11-14,11-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=48.9)
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=41.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGAAAGTATTTGGGCGG
R:
CACTTAGCAGCATAGGGGCAC
Band lengths:
102-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development