HsaALTA1035487-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000151612 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:145775869-145779511:-
Coord C1 exon
chr4:145779374-145779511
Coord A exon
chr4:145775959-145775960
Coord C2 exon
chr4:145775869-145775958
Length
2 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCCTGTTCCTTCTCCCCCAGAGG
3' ss Score
10.11
Exon sequences
Seq C1 exon
AAACAGAAAAGATAGTCCTAGAGGCAGGAAATGGATTACCATCCTGGAAATTCAATGACCAGCTTTTTCCCTGTGACGTGTGTGGGAAAGTGTTTGGCCGACAGCAGACATTGTCCCGACACCTCTCGCTGCACACAG
Seq A exon
AG
Seq C2 exon
GAAAGAAAATACAAATGCCACTTGTGCCCCTATGCTGCTAAGTGCCGTGCAAATCTGAACCAGCACTTGACCGTCCATTCCGTGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151612-47-38,47-37,47-36-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=48.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACATTGTCCCGACACCTCT
R:
GTGCTGGTTCAGATTTGCACG
Band lengths:
99-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains