DreALTA0033622-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000076171 | znf827
Description
zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
Coordinates
chr1:35304603-35306984:-
Coord C1 exon
chr1:35306847-35306984
Coord A exon
chr1:35304903-35304941
Coord C2 exon
chr1:35304603-35304902
Length
39 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTTTGCTTTGTCTCTACAGAAG
3' ss Score
9.96
Exon sequences
Seq C1 exon
ATCCAGAGAAGGTGAGTAGTGAGCCAGGAAATGGACTTTCCCAATGGAGACTCAACGAACAGCTCTTTCCCTGCCCTGTGTGTGGCAAAGTGTTTGGTCGCCAACAGACTCTCTCCAGGCATCTCTCCTTACACACAG
Seq A exon
AAGAGAGGAAATACAAGTGTCATTTGTGTCCATATGCAG
Seq C2 exon
CTAAGTGCCGAGCCAACCTCAACCAGCACCTCACCATCCACTCAGTCAAACTGGTGAACACAGATGTCGAGCAGATTGTTACCGCTGTTACCAACGATGGCCCAGAGCTCAAAAACTGCCCCTACTACTACAGCTGCCATGTCTGCGGCTTCCAGACAGAGTTCAATGCTCAGTTTGTCAGTCATATGTCTCTTCATGTGGACAAAGAGCAGTGGATGTTTTCTCTCTGCTGTAGCACCTGTGAGTATGTGGGTGTGGACGAGGCCGAGATGAAAGCTCACATCAGTGCAGGGCACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076171-12-14,12-13,12-12-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=48.9)
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=21.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGAACAGCTCTTTCCCTGC
R:
GATGGTGAGGTGCTGGTTGAG
Band lengths:
123-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]