GgaALTA1036322-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009982 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:30668981-30670749:-
Coord C1 exon
chr4:30670612-30670749
Coord A exon
chr4:30669070-30669072
Coord C2 exon
chr4:30668981-30669069
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GTTTTCTGTTTCTTTCTCAGAAG
3' ss Score
10.21
Exon sequences
Seq C1 exon
AAACAGAAAAGCTAGGGTTGGAAGCAGGAAACGGATTGCCATCGTGGAAATTTAATGACCAGCTCTTTCCCTGTGAAGTGTGTGGAAAAGTGTTTGGTCGACAGCAGACTTTGTCGCGACATCTCTCGCTGCACACAG
Seq A exon
AAG
Seq C2 exon
AGAGAAAATACAAATGCCACTTGTGCCCCTACGCTGCTAAGTGCCGTGCTAATCTGAACCAGCACCTGACCGTTCATTCTGTGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982-18-19,18-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=48.9)
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=41.4),PF058767=Terminase_GpA=PU(29.5=67.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACTTTGTCGCGACATCT
R:
TGGTTCAGATTAGCACGGCAC
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]