BtaALTD0005710-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000019807 | COL27A1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MTP1]
Coordinates
chr8:105143526-105144052:+
Coord C1 exon
chr8:105143526-105143575
Coord A exon
chr8:105143576-105143579
Coord C2 exon
chr8:105144008-105144052
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
TTCTGTCTTTTGTGTTTCAGGGG
3' ss Score
11.71
Exon sequences
Seq C1 exon
GGGCAGCCAGGACCCGAGGGTAGCCCAGGGGCCAAAGGTTACCCTGGCAG
Seq A exon
GCAG
Seq C2 exon
GGGCTGCCTGGACCTGTAGGAGACCCTGGGCCCAAAGGTAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019807-14-10,15-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.9=100),PF0139113=Collagen=FE(24.3=100),PF0139113=Collagen=PU(2.4=11.1)
A:
NA
C2:
PF0139113=Collagen=PD(5.6=33.3),PF0139113=Collagen=FE(21.5=100),PF0139113=Collagen=PU(17.5=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development