BtaALTD0006739-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:102104166-102114021:-
Coord C1 exon
chr4:102113920-102114021
Coord A exon
chr4:102113905-102113919
Coord C2 exon
chr4:102104166-102104240
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GGTCCTTTCTTTCCCTACAGAAC
3' ss Score
11.56
Exon sequences
Seq C1 exon
TTTCACAATAAGGTGACCTGCTTCATGCTGCATCAGATTGAGGAACCCTGCTCCCTGGGGGCTCACGCTGCTGTTATTGTTCCGCCCACCTGGATCATTAAG
Seq A exon
GTGAAGAAACCTCAG
Seq C2 exon
AACTCCCTGAAGGCATCCAATCGGAAAAAGAAGAGAACAAGCTTTAAAAGGAAAGCCAGCAAAAGAGGAACCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980-11-13,12-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.880
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.3=43.6)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTTCATGCTGCATCAGA
R:
CGATTGGATGCCTTCAGGGAG
Band lengths:
109-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development