HsaALTD1029273-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr7:137609535-137619940:-
Coord C1 exon
chr7:137619839-137619940
Coord A exon
chr7:137619824-137619838
Coord C2 exon
chr7:137609535-137609609
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
ATTTCTCTCTCTCCCTACAGAAC
3' ss Score
13.76
Exon sequences
Seq C1 exon
TTTCACAATAAGGTGACCTGCTTCATGCTGCATCACATTGAAGAACCCTGCTCCCTGGGGGCTCATGCTGCTGTTATTGTCCCGCCCACTTGGATCATTAAG
Seq A exon
GTGAAGAAACCTCAG
Seq C2 exon
AACTCCCTGAAGGCTTCAAATCGGAAGAAGAAGAGAACAAGCTTTAAAAGAAAAGCCAGTAAAAGAGGGATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680-37-28,38-28-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.848
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.3=43.6)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGACCTGCTTCATGCTG
R:
CCGATTTGAAGCCTTCAGGGA
Band lengths:
117-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains