RnoALTD0008869-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64587414-64593517:-
Coord C1 exon
chr4:64593416-64593517
Coord A exon
chr4:64593401-64593415
Coord C2 exon
chr4:64587414-64587488
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GCTCCCTCCTTCCCCCACAGAAC
3' ss Score
11.72
Exon sequences
Seq C1 exon
TTTCACAATAAAGTGACCTGCTTCATGCTGCATCACATCGAGGAACCCTGCTCCCTGGGGGCTCATGCTGCTGTTATTGTCCCGCCCACCTGGATCATTAAG
Seq A exon
GTGAAGAAACCTCAG
Seq C2 exon
AACTCCCTGAAGGCTTCCAACCGGAAGAAGAAAAGAACAAGTTTTAAAAGGAAAGCCAGTAAAAGAGGAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-17-14,18-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.828
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.3=43.6)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGCTTCATGCTGCATCA
R:
GTTGGAAGCCTTCAGGGAGTT
Band lengths:
109-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]