GgaALTD0005181-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59613592-59620815:+
Coord C1 exon
chr1:59613592-59613693
Coord A exon
chr1:59613694-59613708
Coord C2 exon
chr1:59620741-59620815
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTTATTTTTTTTTAATGTAGAAC
3' ss Score
7.62
Exon sequences
Seq C1 exon
TTTCATAACAAAGTCACCTGCTTCATGCTACATCACATTGAGGAGCCATGTTCTCTGGGGGCTCACGCGGCTGTCATTGTGCCTCCCACCTGGATCATTAAG
Seq A exon
GTGAAGAAACCTCAG
Seq C2 exon
AACTCATTAAAGACTTCAACACGGCGAAAGAAGAGGACATCTTTTAAAAGAAAAGCCAGCAAAAGAGGCAATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-7-8,8-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.813
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.3=43.6)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGCCATGTTCTCTGGG
R:
GTCCTCTTCTTTCGCCGTGTT
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]