GgaEX0019483 @ galGal3
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59613592-59620815:+
Coord C1 exon
chr1:59613592-59613708
Coord A exon
chr1:59620336-59620431
Coord C2 exon
chr1:59620741-59620815
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTATTACATCTTTATGCAGGGG
3' ss Score
7.03
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
TTTCATAACAAAGTCACCTGCTTCATGCTACATCACATTGAGGAGCCATGTTCTCTGGGGGCTCACGCGGCTGTCATTGTGCCTCCCACCTGGATCATTAAGGTGAAGAAACCTCAG
Seq A exon
GGGGTCTCCATACCAGGAGACGAGCCTGATTGGGCAGGAGACTGGAGCCCCGAAGGGGAAACGGGCGTCTCCTACCCCTATTGGGAGGGTTGGCAG
Seq C2 exon
AACTCATTAAAGACTTCAACACGGCGAAAGAAGAGGACATCTTTTAAAAGAAAAGCCAGCAAAAGAGGCAATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'8-8,'8-7,9-8
Average complexity
C1
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.344 C2=0.813
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.3=43.6)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACCTGCTTCATGCTACA
R:
TCATTGCCTCTTTTGCTGGCT
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]