MmuEX0014426 @ mm10
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:37057954-37064013:-
Coord C1 exon
chr6:37063897-37064013
Coord A exon
chr6:37058306-37058428
Coord C2 exon
chr6:37057954-37058028
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTTTACATTTCCACATAGGTG
3' ss Score
9.47
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
TTTCACAATAAAGTGACCTGCTTCATGCTGCATCATATTGAGGAACCCTGCTCCCTGGGGGCTCACGCCGCTGTTATTGTCCCGCCCACCTGGATCATTAAGGTGAAGAAACCTCAG
Seq A exon
GTGATCTCCATACCAGGAGATGAACTTGAACTTGGTTGGGCGGGAGACGGACCTGGTTGGGCGGGAGACTGGAGCCCCTCAGAGAATTTGGGATTCTTCCATTTTTACTGGGAGGGTTGGCAG
Seq C2 exon
AACTCCCTGAAGGCTTCCAACCGGAAGAAGAAGAGGACAAGTTTTAAAAGGAAAGCCAGTAAAAGAGGAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.831
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.3=43.6)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000101532fB1291
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATAAAGTGACCTGCTTCATGC
R:
CAGTTCCTCTTTTACTGGCTTTCCT
Band lengths:
186-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types