HsaEX1011463 @ hg38
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr7:137609535-137619940:-
Coord C1 exon
chr7:137619824-137619940
Coord A exon
chr7:137609879-137610001
Coord C2 exon
chr7:137609535-137609609
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTTTACATTTCCACATAGGTG
3' ss Score
9.47
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
TTTCACAATAAGGTGACCTGCTTCATGCTGCATCACATTGAAGAACCCTGCTCCCTGGGGGCTCATGCTGCTGTTATTGTCCCGCCCACTTGGATCATTAAGGTGAAGAAACCTCAG
Seq A exon
GTGATCTCCATACGAGGAGATGAACTTGAACTTGGTTGGGCGGGAGACGAACCTGGTTGGGCGGGAGACTGGAGCCCCTCAGAGAATTTGGGATTCTTCCATTTTTACTGGGAGGGTTGGCAG
Seq C2 exon
AACTCCCTGAAGGCTTCAAATCGGAAGAAGAAGAGAACAAGCTTTAAAAGAAAAGCCAGTAAAAGAGGGATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680-'38-28,'38-27,39-28
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.848
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.3=43.6)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000288490fB13706
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATAAGGTGACCTGCTTCATGC
R:
TCCATCCCTCTTTTACTGGCT
Band lengths:
186-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains