RnoEX0027531 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64587414-64593517:-
Coord C1 exon
chr4:64593401-64593517
Coord A exon
chr4:64587754-64587876
Coord C2 exon
chr4:64587414-64587488
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTTTACATTTCCACATAGGTG
3' ss Score
9.47
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
TTTCACAATAAAGTGACCTGCTTCATGCTGCATCACATCGAGGAACCCTGCTCCCTGGGGGCTCATGCTGCTGTTATTGTCCCGCCCACCTGGATCATTAAGGTGAAGAAACCTCAG
Seq A exon
GTGATCTCCATACCAGGAGATGAACTTGAACTTGGTTGGGCGGGAGACGGACCTGGTTGGGCGGGAGACTGGAGCCCCTCAGAGAATTTGGGATTCTTCCATTTTTACTGGGAGGGTTGGCAG
Seq C2 exon
AACTCCCTGAAGGCTTCCAACCGGAAGAAGAAAAGAACAAGTTTTAAAAGGAAAGCCAGTAAAAGAGGAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.828
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(28.3=43.6)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000033268fB4100
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATAAAGTGACCTGCTTCATGC
R:
CTCGGTTCCTCTTTTACTGGCT
Band lengths:
188-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]