BtaALTD0006835-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29409295-29412811:-
Coord C1 exon
chr5:29412692-29412811
Coord A exon
NA
Coord C2 exon
chr5:29409295-29409492
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
GGGGTGTTTTTTTGGTACAGTAC
3' ss Score
4.66
Exon sequences
Seq C1 exon
GTGTTCCTGTCAATAGCAGAGTATCCACAAAAATCCAGCAGCTTCTCAACACTCTGAAACGACCCAAAAGGCCTCCCTTAAAAGAATTTTTTGTGGATGATTCTGAAGAAATTGTGGAAG
Seq A exon
NA
Seq C2 exon
TACCTCAGCCAGACCCTAACCAACCCAAGCCTGAGGGACGGCAGATGACCCCTGTGAAGGGAGAACCACTAGGAGTCATCTGTAACTGGCCCCCTGCTCTGGAGTCTGCCCTGCAGCGCTGGGGCACTACTCAGGCAAAATGCCCCTGTCTGACCGCACTGGATGTAACGGGGAAGCCAGTTTACACTCTTACTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246-10-11,11-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.732 A=NA C2=0.284
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(5.9=41.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACGACCCAAAAGGCCTC
R:
GCTTGGGTTGGTTAGGGTCTG
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development