RnoALTD0009018-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141822528-141824750:+
Coord C1 exon
chr7:141822528-141822647
Coord A exon
NA
Coord C2 exon
chr7:141824553-141824750
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
3' ss Seq
CTTCTGCTTGTTTGCCACAGTAC
3' ss Score
7.33
Exon sequences
Seq C1 exon
GTGTTCCTGTCAATAGCAGAGTGTCTACAAAAATCCAGCAACTTCTCAACACTCTGAAACGACCCAAAAGACCCCCCTTAAAGGAATTTTTTGTGGATGACTCTGAAGAAATTGTGGAAG
Seq A exon
NA
Seq C2 exon
TACCTCAGCCAGATCCCAACCAGCCAAAGCCTGAGGGCCGCCAGATGACTCCAGTGAAGGGAGAGCCCCTCGGCGTCATCTGTAACTGGCCACCTGCACTGGAATCTGCCCTGCAGCGCTGGGGCACTACCCAAGCCAAGTGCCCTTGCCTCACTGGACTGGATGTGACGGGGAAACCAGTCTACACCCTCACATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106-15-16,16-16-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.707 A=NA C2=0.284
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(5.9=41.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACGACCCAAAAGACCCC
R:
CTTTGGCTGGTTGGGATCTGG
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]