MmuALTD0004265-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000023026 | Dip2b
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:99985465-99987798:+
Coord C1 exon
chr15:99985465-99985584
Coord A exon
NA
Coord C2 exon
chr15:99987601-99987798
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
3' ss Seq
TTCTTGCTTGTTTGCCACAGTAC
3' ss Score
6.54
Exon sequences
Seq C1 exon
GTGTTCCTGTCAATAGCAGGGTGTCCACAAAAATTCAGCAGCTTCTCAACACCCTGAAGCGACCCAAAAGACCCCCCTTAAAGGAATTTTTTGTGGATGACTCTGAAGAAATTGTGGAAG
Seq A exon
NA
Seq C2 exon
TACCTCAGCCAGATCCCAACCAGCCAAAGCCTGAAGGCCGCCAGATGACCCCAGTGAAAGGAGAGCCCCTGGGCGTCATCTGTAACTGGCCACCTGCACTGGAATCTGCCCTGCAGCGCTGGGGCTCTACCCAAGCCAAGTGCCCCTGCCTGACTGGGCTGGATGTGACGGGGAAACCAGTCTACACTCTCACATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-11-9,12-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=NA C2=0.276
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(5.9=41.8)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTTCTCAACACCCTGAA
R:
GGTTGGGATCTGGCTGAGGTA
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: