MmuINT0049602 @ mm9
Intron Retention
Gene
ENSMUSG00000023026 | Dip2b
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:99985465-99987798:+
Coord C1 exon
chr15:99985465-99985587
Coord A exon
chr15:99985588-99987600
Coord C2 exon
chr15:99987601-99987798
Length
2013 bp
Sequences
Splice sites
5' ss Seq
GTAGTAGTA
5' ss Score
-12.24
3' ss Seq
TTCTTGCTTGTTTGCCACAGTAC
3' ss Score
6.54
Exon sequences
Seq C1 exon
GTGTTCCTGTCAATAGCAGGGTGTCCACAAAAATTCAGCAGCTTCTCAACACCCTGAAGCGACCCAAAAGACCCCCCTTAAAGGAATTTTTTGTGGATGACTCTGAAGAAATTGTGGAAGGTA
Seq A exon
GTAGTAAAAGGGCCAGAAGCACACACGCACTCATCAGAAGTCAGCACAGTTGTGCCTGAAAGGGCTTCATGTCGCTATGCCATTCCCCCCAGAATCATTTACCTGTTAGGTCTCAGGCAGGGCCGTTGAGGAGATGGGCAGAGAGGACTGGAGCTTAGAGCTGTCCCTTTTGTTGTTCTGAGGCGTACGCTGTGACCACAGCCGAATAGTAATGGATTTGGTGTGTCGGAGACTAGTTCTACTGATTGTAAATAGACCTCTTTCACTGATGATCCTTTAAGGAACGCCAGTGTCTGTGGAAGCGTGACAGAGTACCTGGGAGCCTCATGGGAAACTGCCTGCCATTGTACAGGCACTGTGGAGATGGCACAGCTTATTAAAGAGGAACTCCTGGGTGTTCCTTTTACAGTTAGACTAACTTTAAAAACCTGTAATGTTACATGCAAAGTAAGGAGTGAGACAAATATTAAGTCACTAGAATGGATCAAGAGAAATGGATCCAGGGAAAGATCATTTTGCTTTGTGAACAAGCAGGATGCGGAAACATGAAGAGTGCATGGTTTTTGTTGTCATCTAGATTTAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCGCGCGCGCGCGCAGGTTGTGAAAAGGGGGCACTTGAAAGAGAGGAGAAGGAAATCCTAACAGAGGTGGGGACCAGAGAGAAATGTGACAGAAAAGCAGAGTGAGGACTGTTTGGAGGGAGCAAGGAGACCAGCCAGAGGGGAGCAGGGGCCGTGGAGCTGCATGAGAACAAAGTGCAATGGTAGGGACAAGGAAAGTGCTGGTAGGAACCCACTGCTTTGTGTGCCGACTCTATAAAGAGTCAAACATTGGAAGGGAATCCTGCAAATCCACCGTGGTAGTAAGTTACAAAGAACAATTGTTTCCTTATTTTTAGTTGTCTATACTGATTTATTTTATGTATATGGGTGTTTTGCCTACATGCATGTATGTGTATCCCTTCATGCCTTGTGCCCACAGAGGCTAGAATAGGGTGTCAGGTCTTCTGGACCTGGAATTACAGACTGACGAGCTGACATGTGGATGCTCTGACTTGAACCTGGGTCATCTGAAGAGCAGTTGTCCTCTTAACCACGGAGACAGCTGGCCCACATACACTCAGAGCATGTGCACAGCACAACCAGGACATGGGAAGTTCTGGAGAGAGAAATGTCACCAACTGGAGAGAAGTGACTGAGCTGAAGTGTTACTCCCTACTGTTGTCTGGGTGCGCTGTGCACTCTGTAGCTGTGTGTGCAGGATTGGCTTTCTCAGTGTCTGCTGAGATAAGAGTCCTGCCTGTCGTGTCCATGGCAGACCTTGGACCTGAGATTGCTCTTGCCTCCTGGACTCTGAGACTGAGCTTGGCTACCACACCCACTTGTTCATGTTCTCAGTCTGTGCACATATGGTACACACTAAATACTCCACTTTTTAGTCTAATTTATGTCTAAATTTCCTTCAGTGAGGATGTACAAGTTAAGGCTGAGCATGGTGGGAGAGAGCCATGTCGATCTCTGTGAGTTCAAGGCCATCCTGATCTACATAGCGAATTCCAGGCAAACCAAGCTACATAGTAAGATCCTGCCTCAAAAACAAAACAAACAATACCAACAGCCAACAAAAGAAATGTAGGACTTAAAGAATTCTTTGAATAATGTATGTTCACTGTAGAAAAATCTACGGTATAGAAATGAGTATAGAACATTCCTTCAGATTGTTAGGTAAGTGTTCCTCTCTGTCCCTCACAATGGAGCTCAGCTGACTCTGATAAGCAGCCTTTATATTTGGGCACTCCCAGCAGTAGGAGTAGGAGCCACCCTCCCCCGGAAGCTCTGATCTGTGAGAGCCCTAGTTGTCCTGTCTCAATGTGAGAAGACATCAGAGACTGAGGAAAAAGTTGTGCCAGAGGTTAGAGTTATGTTCGAGCCCCATGAACTTACTTTGTCTTCTTGCTTGTTTGCCACAG
Seq C2 exon
TACCTCAGCCAGATCCCAACCAGCCAAAGCCTGAAGGCCGCCAGATGACCCCAGTGAAAGGAGAGCCCCTGGGCGTCATCTGTAACTGGCCACCTGCACTGGAATCTGCCCTGCAGCGCTGGGGCTCTACCCAAGCCAAGTGCCCCTGCCTGACTGGGCTGGATGTGACGGGGAAACCAGTCTACACTCTCACATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-Dip2b:NM_001159361:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.456 A=NA C2=0.276
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(5.9=41.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: