DreINT0057222 @ danRer10
Intron Retention
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27458338-27459797:-
Coord C1 exon
chr23:27459678-27459797
Coord A exon
chr23:27458536-27459677
Coord C2 exon
chr23:27458338-27458535
Length
1142 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAA
5' ss Score
7.08
3' ss Seq
TTCATATTTCCCACTTGCAGTTC
3' ss Score
9.58
Exon sequences
Seq C1 exon
GTGTTCCAGCACACAGTCGTGTCTCCACTAAAATACAGCAGCTGCTTAACACGTTGAAGAGACCCAAGAGGCCTCCGCTCAGCGAGTTCTTCCTGGATGACTCTGAAGAGATCGTGGAAG
Seq A exon
GTATAAAGATTTACTGGAATATGTTTTATCATATTTTATAATTCTTTAAATTAACTTGTATGAATGGAGTTTTTTTTTTAATAAAATATAAACCATACAAACCACACTGAAAGTAATCATTTTTTAATCTTGATTTTTTTATTATTATTATTAATATTATTTTTTTAATATGTTCACATAGTCAGTTCGAATTCAAATAGGTGTACTCTCTGTATGTATCTTATTTAAATGAAATGGAACATAAATTTACCAAGTAGCATGTAATAGCAGTGATAGTGAAATTAAGCATTCTCAACCAGTGAACCGTTCAACTCAATTGTATCGGAAAAAGGTTCGTTACTTGAAGCTTTCCAAATCAGATCTTAATAAGGACATCTGGTGGTTAAAGTGTGGGTAAGCATTGTGTTAAAAATGTAAAACATTCATAACTGACCAACTCATTCATGTAAGTAATACACCAATAGTAATATAAACAAATTACACTGGTGTTCTTTAACATACAAGGTATGTTACATTACACCACCGATGACTAGTAAAATCCAAGGTGTTCATAAGTACTTTATCTATTCCAATCGATCCTACACCCACACTCTCGTTCTGAGCGGGAATTTAACTTGCGATTCCTGTATGGGAGGCGAATGCTCTGAGGAGGCTATTAGAGACTCTTGCGCTGTATTTGTCAGCTGCCCTCCTTTACACACTATACTATAATATTAATTCATTTTCTTTTCGGCTTAGTCCCTTTATTAATCCGGGGTCGCCACAGCGGAATGAACCGCCAACTTATCCAGCACATTTTTACACAGCGGATGCCCTTCCGGTCGCACCCATCTCTGGGAAACATCCACACACATTCATTCACACACATACTACGGACAATTTAGCCTACCCGATTCACCTTTATCGCATGTCTTTGGACTGTGGGGGAAACCGGAGCACCCGGAGGAAACCCATGTGAACGCAGGGAGAACACACACAGCGTCACATCACTGTATAATAGTACATACAGTACATAAAAATTCCTCATTATTTTATATAATGTTTCTTTTCTTTCTAGCATTAAATTACATTTTGAGCTCAAGTTTTTCATTGTGTCTTAAATTCTCCATTGGTAATGTATTCTTCATATTTCCCACTTGCAG
Seq C2 exon
TTCCCCAGCCAGATCCTAACACACCTAGGCCAGAGGGCCGGCAGATTATTCCAGTGAAGGGGGAGCCGCTAGGGGTGGTCAGTAACTGGCCTCCAGCTTTGCAGGCAGCGCTGGCACGCTGGGGAGCCACACAGGCTAAAAGCCCTGCTCTCACTGCCTTAGACATCACCGGAAAACCCCTCTATACCCTGACCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350:ENSDART00000019521:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.805 A=NA C2=0.284
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(6.1=43.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCCAGCACACAGTCGTG
R:
CATAGGTCAGGGTATAGAGGGGT
Band lengths:
318-1460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]