RnoINT0047765 @ rn6
Intron Retention
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141822528-141824750:+
Coord C1 exon
chr7:141822528-141822647
Coord A exon
chr7:141822648-141824552
Coord C2 exon
chr7:141824553-141824750
Length
1905 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
3' ss Seq
CTTCTGCTTGTTTGCCACAGTAC
3' ss Score
7.33
Exon sequences
Seq C1 exon
GTGTTCCTGTCAATAGCAGAGTGTCTACAAAAATCCAGCAACTTCTCAACACTCTGAAACGACCCAAAAGACCCCCCTTAAAGGAATTTTTTGTGGATGACTCTGAAGAAATTGTGGAAG
Seq A exon
GTAGTAGTAAGGGCCGAAGCATGCACCCATCAGGAGTCAGGACAGGGAAGCCTGAGCGTGGGCTTCCTGTCACTGCGCCGTTCCCCCAGTCATTCTCCTGTTAGGTCTCAGGAAGAAGGGGCTGGGGAGAGGGACAGAAGGACTGGAGTTTAGCGCCGTCCTCTTGTGTGTATGCAGTAATCACACCAGAATAGTAATCGAGTTTTGTGTGTTGGAGACTAGTTTTACTAATTGAACTTTTGCTAGACTTCTCTGACTAATGATCCTTTTTAGAAAAGAGAAGTGCCGATGTCTGGAAGCATGAGGGAGTGTGCCCTGGAGCCTCATGGGAAACAGCTGCCTGCCAGGAGTGCAGGCTCAGTGGAGATGAGTCACTCGGGTGTTCCTCTTCCATTTAGACTAAGTTTAAAAACCTGTAAGATTGTAGGCAAAGTAAGGGTGAGACAAGTTTTAAGTCACTTGAATGGATCCAGAGAAATGGATCCAGGGAGAGATCATTTTGCTTTGTGAACTAGCAAGATGCAGAAACATAAAGACTGCATGGTTTTTCTTGTAGAATCTAGATTTGAATGTATATGTGTGCAGGTCATGAAAAGGGGGGACTGAAAGAGAGAAGGAAGTCCTAACAGAAGTGGGGGCCAGAGACAAAGGGAGCCCCTATGACAGAAAAGCAGAGTGAGGCGTGAGGACTGTTTGGAGGGAGGAACAGGGCTGGGTCGGCTGCATGAGGACAAAGTGTAATGATAAAGACTGAGAAAGTGCGTTAGGAAGCCTCTGCTTTGTGTGCTGACTGAAAAAGAACAAGTCAAGCATTGTGAGTTTACAAATCCATCATATTACTAGGTTATAGAGAACAATGCTCTCCTTATTTTTAGTTGTCTATACTGATTTGTGAATATGGGTGCTTTGCCAACATGCGTGTATGTATACTGCTTCATGCCTACATGCGTGTATGTATACCGCTTCATGCCTTGCATGCGTGTATGTATACCGCTTCATGCCTACATGCGTGTATGTATACCACTTCATGCCTTGTGCCCACAGAGGCTAGAATAGGGTGTCAGATCTTCTGGACCTAGAGTTACAGACTGGTGAGCTGACGTGTGGCTGCTATGGCTTGAACCTGGGTCATCTGGAAGAGCAGCCAGTCCTCTCTGGCCCACGTGCAGCCACAGCATGCACTAAGAGCATGTGCACAGCAAAACCAGGCCATGGGAAGTGTGGGAGAGAGAAATGTCCCCTGAGCTGGAGCAGTACTTCTTACTGTAGCTGTCTGTGCAGGGTTTGTTCTCTGTGTTTGTTGAGATAAGAGTCCTTATCCTGAGACCGTGCTTACCTCTGAGACCAAGCTAGGCTCGTACGCAGCTTGTTCACGTTCTCAGTCTGTCATAGTCTGTGCACATATGATGAAACACACTGGATACTTCACTTTTTAGTCTATTTCTAAATGTTTTTCTGTGAGAATGTAGAAATTAAGGCTGAGCGTGGTGGGAGACAGAGGCATGTGGCTCTCTGTGAGTTCAAGGCCATACTGATCTACATAGTGAGATCCTACCTCAAAAACAAACGATACCAATAATACATGAGTAATATATGTTCACTGTTGAAAAATCTACTGTAGAAATGAGTATAAAACACTCCCTCAGATTCTTGGATAAGCGTTTGTCTCTCTGTCCCTCACAGTTGGGCTCAGCTGACTCTGATAAGCAGCCATTATGTTTGGGCAGTGTGTGGAGTAAGAACCACCCTCCCCTGGGAAGCTGTGACCTCTGTGGGAGGACGGCAGAAGCCTTAGTTGTCTTGTCTCAATTCGAGAAGTCAGGGACTGCGGAGAAAGATGTGCCAGAGGTTAGAGTTGTGTTAGGGCCCCGTGAACTTACTCCATCTTCTGCTTGTTTGCCACAG
Seq C2 exon
TACCTCAGCCAGATCCCAACCAGCCAAAGCCTGAGGGCCGCCAGATGACTCCAGTGAAGGGAGAGCCCCTCGGCGTCATCTGTAACTGGCCACCTGCACTGGAATCTGCCCTGCAGCGCTGGGGCACTACCCAAGCCAAGTGCCCTTGCCTCACTGGACTGGATGTGACGGGGAAACCAGTCTACACCCTCACATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106:ENSRNOT00000086577:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.707 A=NA C2=0.284
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(5.9=41.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCCTGTCAATAGCAGAGTGT
R:
CGTATGTGAGGGTGTAGACTGG
Band lengths:
318-2223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]