GgaINT1011330 @ galGal4
Intron Retention
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:173991-174880:-
Coord C1 exon
chrLGE22C19W28_E50C23:174761-174880
Coord A exon
chrLGE22C19W28_E50C23:174189-174760
Coord C2 exon
chrLGE22C19W28_E50C23:173991-174188
Length
572 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
CATTGGTGAATTTCCTTCAGTTC
3' ss Score
5.46
Exon sequences
Seq C1 exon
GTGTTCCTGTGAGTAGTAGAGTCTCCACAAAGATTCAACAGTTGCTGAACACCTTGAAGAGGCCTAAGAGGCCACCTCTGAAAGAATTTTTTGTGGATGACTTTGAAGAGATTGTGGAAG
Seq A exon
GTAATAGCACTGTGTTTTTGTGAATCATTTTTGATGCACACAGTCCTGTGGTTTTTTTATGCCTTTGTTTTTGATGTTGACTCAGATGGATTTACTATTTGCAGCTGGCAGTATGTTCATGAAGAGTGATTGAAATGAAATAACACACTGTACTGCTGAGTTTTGTAGGGCCTCCTCCATGCTAACTTCTTACAATAACTAAAGTGTACTAACAGAAAATATTTAAATGCTTAAATGCTTAAAAACCCTTCCTCTGCTTAGGCTCCTTCACTTAGATTTCCAAAATTAATTGTCTTTGATTATTTCATTATGACCTTATTTTCTAAGCTTTTCTTTTATCCAATTCTATGTTACCTTACTTACTACTGTATTGAATACTTTTTAATAGCATTTTAGGAGAAGGCGGAGGTATTTTGCTTTGTGCAGGACTTCCTAGAGACTGAAGTGTCATGGGGTGGTTAAGCCTAAAGGCTATAAGGAAAAGGCATTTATTCTCAATGTGTCCTGTGGACTTAACTGCCCCAGAACAAATAGTACAAGATGAGCTGGAAACATTGGTGAATTTCCTTCAG
Seq C2 exon
TTCCACAGCCTGACCCAAATCAGCCCAAGCCAGAAGGACGGCAGATGACCCCTGTGAAAGGAGAACCCCTGGGAGTTGTTTGTAACTGGCCTCCTGCCTTAGAAGCAGCACTGCAGCGCTGGGGAACCACACAAGCTAAATGTCCCTGTCTGACAGCACTGGATGTTACAGGAAAACCAGTTTATACCCTCACATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139:ENSGALT00000009909:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=NA C2=0.289
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(5.7=40.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCCTGTGAGTAGTAGAGTCT
R:
CGTATGTGAGGGTATAAACTGGT
Band lengths:
318-890
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]