MmuALTD0004265-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100155034-100157367:+
Coord C1 exon
chr15:100155034-100155153
Coord A exon
NA
Coord C2 exon
chr15:100157170-100157367
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
3' ss Seq
TTCTTGCTTGTTTGCCACAGTAC
3' ss Score
6.54
Exon sequences
Seq C1 exon
GTGTTCCTGTCAATAGCAGGGTGTCCACAAAAATTCAGCAGCTTCTCAACACCCTGAAGCGACCCAAAAGACCCCCCTTAAAGGAATTTTTTGTGGATGACTCTGAAGAAATTGTGGAAG
Seq A exon
NA
Seq C2 exon
TACCTCAGCCAGATCCCAACCAGCCAAAGCCTGAAGGCCGCCAGATGACCCCAGTGAAAGGAGAGCCCCTGGGCGTCATCTGTAACTGGCCACCTGCACTGGAATCTGCCCTGCAGCGCTGGGGCTCTACCCAAGCCAAGTGCCCCTGCCTGACTGGGCTGGATGTGACGGGGAAACCAGTCTACACTCTCACATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-26-14,27-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=NA C2=0.279
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(5.9=41.8)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTTCTCAACACCCTGAA
R:
GGTTGGGATCTGGCTGAGGTA
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types