BtaALTD0012842-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008755 | MARCH7
Description
Bos taurus membrane-associated ring finger (C3HC4) 7 (MARCH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001100317]
Coordinates
chr2:36687533-36690323:-
Coord C1 exon
chr2:36690214-36690323
Coord A exon
chr2:36690191-36690213
Coord C2 exon
chr2:36687533-36687646
Length
23 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CATTTGCTTCCCTCTTGAAGGCT
3' ss Score
7.66
Exon sequences
Seq C1 exon
GTTCTTCACTAGAGGCTGTAACCACCTGTGAACTCTGTAAAGAGAAGTTGCAGCTTAACCTGGAGGATTTTGATATTCATGAACTACATAGAGCTCGTGCAAATGAACAA
Seq A exon
GTTAGTATATTTTGCCTAATTTG
Seq C2 exon
GCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTTGTGTTATTGCACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACGAATGAACCAAGCACACGTGTCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008755-15-11,16-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129062=RINGv=PD(21.4=32.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTACATAGAGCTCGTGCA
R:
TCAGAAAAGCTTTGTTCGCACA
Band lengths:
105-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development