MmuALTD0008218-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026977 | March7
Description
membrane-associated ring finger (C3HC4) 7 [Source:MGI Symbol;Acc:MGI:1931053]
Coordinates
chr2:60240943-60243670:+
Coord C1 exon
chr2:60240943-60241052
Coord A exon
chr2:60241053-60241075
Coord C2 exon
chr2:60243557-60243670
Length
23 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TCTTTGCTTCCCCATTTAAGGCT
3' ss Score
8.19
Exon sequences
Seq C1 exon
GCTCTTCATTAGAGGCTGTGACTACCTGTGAACTCTGTAAAGAGAAGTTGCAACTTAACCTGGAGGATTTTGATATTCATGAACTACATAGAGCTCATGCAAATGAACAA
Seq A exon
GTTAGTATATTTTGCCTAATTTG
Seq C2 exon
GCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTTGTCTTACTGCACTTGTGTGAACAAAGCTTTTCTGATATGATGGGAAATACAATTGAACCAAGCACTCGTGTCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026977-25-29,26-29-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129062=RINGv=PD(21.4=32.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAACTACATAGAGCTCATGCA
R:
AAGCTTTGTTCACACAAGTGCA
Band lengths:
102-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types