HsaALTD0003778-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000136536 | MARCH7
Description
membrane associated ring-CH-type finger 7 [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr2:159759292-159762993:+
Coord C1 exon
chr2:159759292-159759335
Coord A exon
chr2:159759336-159759358
Coord C2 exon
chr2:159762880-159762993
Length
23 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TGTTTGCTTCCCTGTTGAAGGCT
3' ss Score
6.61
Exon sequences
Seq C1 exon
ATTTTGATATTCATGAACTACATAGAGCTCATGCAAATGAACAA
Seq A exon
GTTAGTATATTTTGCCTAATTTG
Seq C2 exon
GCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTGGTGTTATTGCACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACAAATGAACCAAGCACACGTGTCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136536-31-34,32-34-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF129062=RINGv=PD(21.4=32.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAACTACATAGAGCTCATGCA
R:
TCAGAAAAGCTTTGTTCGCACA
Band lengths:
108-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development