RnoALTD0017617-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000006241 | March7
Description
membrane associated ring-CH-type finger 7 [Source:RGD Symbol;Acc:1308993]
Coordinates
chr3:46316937-46319753:+
Coord C1 exon
chr3:46316937-46317046
Coord A exon
chr3:46317047-46317069
Coord C2 exon
chr3:46319640-46319753
Length
23 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TCTTTTCTTCCCCATTTAAGGCT
3' ss Score
9.16
Exon sequences
Seq C1 exon
GTTCTTCATTAGAGGCTGTAACCACCTGTGAACTCTGTAAAGAGAAGTTGCAACTTAACCTGGAGGATTTTGATATTCATGAACTACATAGAGCTCATGCAAATGAACAA
Seq A exon
GTTAGTATATTTTGCCTAATTTG
Seq C2 exon
GCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTTGTCTTACTGCACTTGTGTGAACAAAGCTTTTCTGATATGATGGGAAATACAATCGAACCAAGCACGCGCGTCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006241-19-17,20-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129062=RINGv=PD(21.4=32.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAACTACATAGAGCTCATGCA
R:
AAGCTTTGTTCACACAAGTGCA
Band lengths:
102-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]