BtaALTD0018115-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000005180 | RBMS1
Description
Bos taurus RNA binding motif, single stranded interacting protein 1 (RBMS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035361]
Coordinates
chr2:36164593-36165826:+
Coord C1 exon
chr2:36164593-36164690
Coord A exon
chr2:36164691-36164699
Coord C2 exon
chr2:36165777-36165826
Length
9 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TTTCTTTTTCTTTCCCATAGGCT
3' ss Score
13.4
Exon sequences
Seq C1 exon
AACCGTTATTGTGTAAATTTGCGGATGGCGGACAGAAGAAGAGACAGAACCCAAACAAATACATCCCAAATGGACGGCCCTGGCACAGAGAAGGAGAG
Seq A exon
GTGAGACTT
Seq C2 exon
GCTGGAATGACACTTACTTATGACCCAACCACAGCTGCTATACAGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005180-12-12,13-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=0.294
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGACAGAAGAAGAGACAG
R:
AGCTGTGGTTGGGTCATAAGT
Band lengths:
108-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development