GgaALTD0004442-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000011132 | RBMS1
Description
RNA-binding motif, single-stranded-interacting protein 1 [Source:RefSeq peptide;Acc:NP_990355]
Coordinates
chr7:21254096-21255120:+
Coord C1 exon
chr7:21254096-21254202
Coord A exon
chr7:21254203-21254211
Coord C2 exon
chr7:21255071-21255120
Length
9 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TTCCACTTATTTTTTTAAAGGCT
3' ss Score
7.02
Exon sequences
Seq C1 exon
TTCCTGCAGAACCTTTATTGTGCAAGTTTGCTGATGGAGGACAGAAAAAGAGACAGAATCAGAATAAATACATACAGAATGGAAGAGCATGGCACAGAGAAGGCGAG
Seq A exon
GTGAGACTT
Seq C2 exon
GCTGGAATGACACTCACTTATGATCCAACCACAGCTGCTTTACAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132-29-18,30-18-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.359 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072716=Cytadhesin_P30=FE(23.3=100)
A:
NA
C2:
PF072716=Cytadhesin_P30=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGCTGATGGAGGACAGA
R:
TCATAAGTGAGTGTCATTCCAGC
Band lengths:
106-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]