HsaALTD1027965-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]
Coordinates
chr2:160285983-160287075:-
Coord C1 exon
chr2:160286978-160287075
Coord A exon
chr2:160286969-160286977
Coord C2 exon
chr2:160285983-160286083
Length
9 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
AGTCTTGCTCTGTCGCTCAGGCT
3' ss Score
4.22
Exon sequences
Seq C1 exon
AACCTTTATTGTGTAAGTTTGCTGATGGAGGACAGAAAAAGAGACAGAACCCAAACAAATACATCCCTAATGGAAGACCATGGCATAGAGAAGGAGAG
Seq A exon
GTGAGACTT
Seq C2 exon
GCTGGAGGGCAGTGGCACGATCTCCGCTCACTGCAAGCTCTGCCTCCTGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250-49-44,50-44-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGACCATGGCATAGAGAAGG
R:
GGAGAATGGCATGAACCCAGG
Band lengths:
93-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains