GgaALTD0004442-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000011132 | O73664_CHICK
Description
NA
Coordinates
chr7:23342670-23343694:+
Coord C1 exon
chr7:23342670-23342776
Coord A exon
chr7:23342777-23342785
Coord C2 exon
chr7:23343645-23343694
Length
9 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TTCCACTTATTTTTTTAAAGGCT
3' ss Score
7.02
Exon sequences
Seq C1 exon
TTCCTGCAGAACCTTTATTGTGCAAGTTTGCTGATGGAGGACAGAAAAAGAGACAGAATCAGAATAAATACATACAGAATGGAAGAGCATGGCACAGAGAAGGCGAG
Seq A exon
GTGAGACTT
Seq C2 exon
GCTGGAATGACACTCACTTATGATCCAACCACAGCTGCTTTACAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132-19-14,20-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=NA C2=0.118
Domain overlap (PFAM):
C1:
PF072716=Cytadhesin_P30=FE(21.9=100)
A:
NA
C2:
PF072716=Cytadhesin_P30=FE(10.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGCTGATGGAGGACAGA
R:
TCATAAGTGAGTGTCATTCCAGC
Band lengths:
106-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]